Recent Publications

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Yap1/Taz are well-known Hippo effectors triggering complex transcriptional programs controlling growth, survival, and cancer …

Germline sex determination is an essential process for the production of sexually dimorphic gametes. In medaka, Forkhead box L3 (foxl3) …

The optic fissure is a transient gap in the developing vertebrate eye, which must be closed as development proceeds. A persisting optic …

DNA adenine methyltransferase identification (DamID) has emerged as an alternative method to profile protein-DNA interactions; however, …

Software

CCTop (CRISPR/Cas9 target online predictor) standalone

CCTop is a tool to determine suitable CRISPR target sites in a given query sequence(s) and predict its potential off-target sites. The online version of CCTop is available at http://crispr.cos.uni-heidelberg.de/

The standalone version has a command line interface designed to allow search of large volume of sequences and higher flexibility. Also advisable if the target genome is not publicly available.

Access CCTop standalone from my bitbucket site.

iDEAR (iDamID Enrichment Analysis with R)

iDEAR identifies the binding profile of a transcription factor (or any DNA binding protein) from iDamIDseq data according to our publication in Development.

Access iDEAR from my bitbucket site.

Teaching

Currently I teach at the University of Oviedo the following subjects:

  • Sistemas Inteligentes (Grado en Ingeniería Informática del Software)
  • Programming Methodology (Grado en Ingeniería Informática en Tecnologías de la Información)
  • Bioinformática (Máster Universitario en Biotecnología Aplicada a la Conservación y Gestión Sostenible de Recursos Vegetales)

Previously

  • Repositorios de Información (Grado en Ingeniería Informática del Software)
  • Sistemas Operativos (Grado en Ingeniería Informática en Tecnologías de la Información)
  • Tecnologías y Paradigmas de la Programación (Grado en Ingeniería Informática en Tecnologías de la Información)
  • Arquitectura del Software (Grado en Ingeniería Informática del Software)

At the University of Heidelberg I’ve taught these subjects (2014-2016):

  • Introduction to Statistical Analysis for Biologists with R (Bachelor in the Faculty of Biosciences)
  • Data Analysis with R (Bachelor in the Faculty of Biosciences)
  • Introduction to Genetics (Bachelor in the Faculty of Biosciences)
  • Statistics for Biology: design, analysis and visualization (Core course in the HBIGS International PhD Program in Molecular and Cellular Biology)

At the University of Castilla-La Mancha I taught these subjects (2006-2010):

  • Minería de Datos (Ingeniería Informática)
  • Bioinformática (Ingeniería Informática)
  • Metodología de la Programación (Ingeniería Informática)
  • Estructuras de Datos y de la Información (Ingeniería Informática)

Contact